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Add hook to ignore failed tests on a64fx for OpenBabel#160

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boegel merged 1 commit intoEESSI:mainfrom
Crivella:feature-obabel_a64fx_hook
Feb 10, 2026
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Add hook to ignore failed tests on a64fx for OpenBabel#160
boegel merged 1 commit intoEESSI:mainfrom
Crivella:feature-obabel_a64fx_hook

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@Crivella Crivella commented Feb 10, 2026

See EESSI/software-layer#1332 (comment)

I am not sure what in the bot procedure is causing this to time out consistently, but i was not able to replicate it manually neither with EESSI-extend only or eessi_container + EESSI_extend.

Since all other tests are always passing i think it is safe to ignore the tests for OpenBabel on a64fx
We could even change pretestopts to echo "Skipping tests" || to not run them at all...

@Crivella Crivella mentioned this pull request Feb 10, 2026
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lgtm

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boegel commented Feb 10, 2026

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2

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eessi-bot-aws bot commented Feb 10, 2026 •
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Loading

New job on instance eessi-bot-mc-aws for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.02/pr_160/129661

date job status comment
Feb 10 20:08:46 UTC 2026 submitted job id 129661 awaits release by job manager
Feb 10 20:09:35 UTC 2026 released job awaits launch by Slurm scheduler
Feb 10 20:15:41 UTC 2026 running job 129661 is running
Feb 10 20:19:50 UTC 2026 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-129661.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-17707545500.tar.zstsize: 0 MiB (26178 bytes)
entries: 1
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
no module files in tarball
software under 2023.06/software/linux/x86_64/amd/zen2/software
no software packages in tarball
reprod directories under 2023.06/software/linux/x86_64/amd/zen2/reprod
no reprod directories in tarball
other under 2023.06/software/linux/x86_64/amd/zen2
2023.06/init/easybuild/eb_hooks.py
Feb 10 20:19:50 UTC 2026 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86-64-zen2+default
P: perf: 443.58 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86-64-zen2+default
P: perf: 452.289 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86-64-zen2+default
P: latency: 2.55 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86-64-zen2+default
P: latency: 2.79 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86-64-zen2+default
P: latency: 6.06 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86-64-zen2+default
P: latency: 5.86 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86-64-zen2+default
P: latency: 0.87 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86-64-zen2+default
P: latency: 0.85 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86-64-zen2+default
P: bandwidth: 6399.2 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86-64-zen2+default
P: bandwidth: 6433.87 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-129661.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Feb 10 20:26:31 UTC 2026 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-17707545500.tar.zst to S3 bucket succeeded

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eessi-bot-aws bot commented Feb 10, 2026 •
edited
Loading

New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2026.02/pr_160/129662

date job status comment
Feb 10 20:08:51 UTC 2026 submitted job id 129662 awaits release by job manager
Feb 10 20:09:32 UTC 2026 released job awaits launch by Slurm scheduler
Feb 10 20:15:37 UTC 2026 running job 129662 is running
Feb 10 20:17:46 UTC 2026 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-129662.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.* created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17707545400.tar.zstsize: 0 MiB (26184 bytes)
entries: 1
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
no module files in tarball
software under 2025.06/software/linux/x86_64/amd/zen2/software
no software packages in tarball
reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod
no reprod directories in tarball
other under 2025.06/software/linux/x86_64/amd/zen2
2025.06/init/easybuild/eb_hooks.py
Feb 10 20:17:46 UTC 2026 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] (1/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /e4bf9965 @BotBuildTests:x86-64-zen2+default
P: latency: 1.3 us (r:0, l:None, u:None)
[ OK ] (2/4) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node %device_type=cpu /3da4890b @BotBuildTests:x86-64-zen2+default
P: latency: 2.02 us (r:0, l:None, u:None)
[ OK ] (3/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /3255009a @BotBuildTests:x86-64-zen2+default
P: latency: 0.18 us (r:0, l:None, u:None)
[ OK ] (4/4) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2025a %scale=1_node /59f4b331 @BotBuildTests:x86-64-zen2+default
P: bandwidth: 7860.57 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 4/4 test case(s) from 4 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-129662.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Feb 10 20:26:39 UTC 2026 uploaded transfer of eessi-2025.06-software-linux-x86_64-amd-zen2-17707545400.tar.zst to S3 bucket succeeded

@boegel
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boegel commented Feb 10, 2026

See EESSI/software-layer#1332 (comment)

I am not sure what in the bot procedure is causing this to time out consistently, but i was not able to replicate it manually neither with EESSI-extend only or eessi_container + EESSI_extend.

Since all other tests are always passing i think it is safe to ignore the tests for OpenBabel on a64fx We could even change pretestopts to echo "Skipping tests" || to not run them at all...

@Crivella Running the tests is always better, since then we have the test result in the installation log...

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boegel commented Feb 10, 2026

staging PR merged

@boegel boegel merged commit 26babc0 into EESSI:main Feb 10, 2026
70 of 72 checks passed
@Crivella Crivella deleted the feature-obabel_a64fx_hook branch February 10, 2026 21:58
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